VMD-L Mailing List

From: anshudx_at_indiatimes.com
Date: Thu May 15 2008 - 13:04:11 CDT

Hi,
I am trying to simulate a biomolecular system using a residue based coarse grain simulations in VMD. It is pretty straightforward to convert the pdb file into the new CG pdb file, however I am not sure how to create the psf file for such system and which parameter (forcefield) to use for simulation. If somebody has any idea please help me.
Thanks in advance
Anshuman