VMD-L Mailing List

From: SHIVAM TIWARI (t.shivam_at_iitg.ac.in)
Date: Mon Jun 22 2020 - 05:50:10 CDT

I know orientational correlation function (OCF) is regularly used for water, but is it meaningful to calculate OCF for a protein to quantify its rotational dynamics, since a protein is not acting as a rigid body in the simulation and is such analysis possible in vmd?

regards
shivam