From: Leonardo Trabuco (
Date: Tue Jul 11 2006 - 11:05:57 CDT


On Tue, Jul 11, 2006 at 11:02:20AM -0400, Yuri Nedialkov wrote:
> I have a problem to find the way to color the part of the atom in one color
> in VMD. For example, in nucleotide-three-phosphate (NTP) I need to color
> three phosphates in one color and don't touch the other part of the
> molecule.

You can create a new representation with only the atoms you want to
change the color, and change the color of the representation to whatever
you want.


Leonardo Giantini Trabuco
Ph.D. candidate
Center for Biophysics and Computational Biology
University of Illinois at Urbana-Champaign