VMD-L Mailing List

From: Yinglong Miao (yimiao_at_indiana.edu)
Date: Mon Feb 16 2009 - 11:51:38 CST

Hi John,

Glad to have you here! It's the one you installed on BigRed cluster at
Indiana University.

Thanks,
Yinglong

On Mon, Feb 16, 2009 at 12:43 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

> Hi,
> What platform are you running on, and which version of VMD is this
> email referring to?
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Mon, Feb 16, 2009 at 12:23:32PM -0500, Yinglong Miao wrote:
> > Dear VMD developers/users,
> >
> > I have been running a VMD script that involves loading PSF/PDB files and
> > writing DCD files for a pretty large system (~3M atoms). The program
> seems
> > to run fine with files processed properly, but error messages like "***
> > glibc detected *** free(): invalid pointer: 0x00000000102a8f28 ***" keep
> > coming up during the program running. I am not sure whether it comes from
> > large system processing or something regarding memory. I looked it up in
> the
> > list archives but found no clue. Has anyone come into such cases? Your
> help
> > will be appreciated!
> >
> > Thanks!
> >
> > --
> > Yinglong Miao
> > Ph.D. Candidate
> > Center for Cell and Virus Theory
> > Chemistry Department, Indiana University
> > 800 E Kirkwood Ave Room C203A, Bloomington, IN 47405
> > Tel: 1-812-856-0981
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ <http://www.ks.uiuc.edu/%7Ejohns/>
> Fax: 217-244-6078
> 

-- 
Yinglong Miao
Ph.D. Candidate
Center for Cell and Virus Theory
Chemistry Department, Indiana University
800 E Kirkwood Ave Room C203A, Bloomington, IN 47405
Tel: 1-812-856-0981