VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Oct 17 2003 - 18:16:47 CDT

Tsu-Fan,
  Are your programmatically-added hydrogens named appropriately for VMD?
VMD assumes that their atom names begin with "H" of course.

  John

On Thu, Oct 16, 2003 at 09:37:06PM -0400, tscheng_at_ic.sunysb.edu wrote:
> Hi vmd-l, a real stupid question, how to draw hbonds in vmd? the traj.
> file I have is a crystal and so has no hydrogen, I use other program to
> add H to it, then select HBonds, and change distance and angle to make
> tham larger, but still see nothing. is there anything I missed? Thank you.
>
> Eureka!
>
> Best regards
>
> Tsu-Fan Cheng
> Department of Pathology
> SUNY Stony Brook
> Stony Brook, NY 11794 

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NIH Resource for Macromolecular Modeling and Bioinformatics
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