VMD-L Mailing List

From: OZGE ENGIN (OZENGIN_at_KU.EDU.TR)
Date: Fri Nov 07 2008 - 19:04:35 CST

Hi All,

I have a problem on the usage of patch for adding diphosphate group to uracil nucleoside. In the Charmm sugar file, this patch is indicated as 5DP. I have already the uracil nucleoside (N-base+ribose sugar). I could not find any information for the usage of this patch (5DP).

Could you give some information for the usage of this patch?

Thanks in advance
Ozge Engin
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Computational Science & Engineering
Koc University