From: Neelanjana Sengupta (
Date: Sat Aug 08 2015 - 01:40:04 CDT

Dear All,

For a given system, I have the Amber topology/parameter (or .prmtop) and
coords (.inpcrd) file. However, I wish to start some runs for this system
with a slightly different initial coordinates, for which I have .xyz / .pdb
files. VMD loads the new .xyz with the .prmtop.

Can VMD write out the new coordinates in .incprd format? Some pointers
would be helpful.

Thanks in advance,