VMD-L Mailing List

From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Tue Apr 05 2022 - 13:21:56 CDT

Hi, the standard distribution of VMD already reads XYZ files, without need
to load additional plugins.

If you need something that is only provided by an external plugin like VMD
store, and its installation fails, you should contact their maintainers
first.

Giacomo

On Tue, Apr 5, 2022 at 2:02 PM Eric Ledieu <evledieu_at_uark.edu> wrote:

> I am trying to view a xyz file, so I got the VMD plugin manager VMD store.
> it claimed to be done with installation and needed a restart, so I did so.
> Now, when I boot it up, it is listing a whole series of things it was
> unable to load, including the XYZ plugin. I think it was most likely
> already there but had less to load. any assistance is appreciated. here is
> the log in full, but the error it gives is 1114 in all cases.
>
> Info) VMD for WIN64, version 1.9.4a51 (December 21, 2020)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 12 CPUs detected.
> Info) CPU features: SSE2 SSE4.1 AVX AVX2 FMA F16 HT
> Info) Free system memory: 26GB (81%)
> Info) No CUDA accelerator devices available.
> Info) OpenGL renderer: GeForce GTX 960/PCIe/SSE2
> Info) Features: STENCIL MDE CVA MTX NPOT PP PS GLSL(OVFGS)
> Info) Full GLSL rendering mode is available.
> Info) Textures: 2-D (16384x16384), 3-D (2048x2048x2048), Multitexture (4)
> Info) No joysticks found. Joystick interface disabled.
> Info) Detected 1 available TachyonL/OptiX ray tracing accelerator
> Info) Compiling OptiX shaders on 1 target GPU...
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/spiderplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/spiderplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/spiderplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/stlplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/stlplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/stlplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/tinkerplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/tinkerplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/tinkerplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/uhbdplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/uhbdplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/uhbdplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vasp5xdatcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vasp5xdatcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vasp5xdatcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspchgcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspchgcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspchgcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspoutcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspoutcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspoutcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspparchgplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspparchgplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspparchgplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspposcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspposcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspposcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxdatcarplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxdatcarplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxdatcarplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxmlplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxmlplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vaspxmlplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtfplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtfplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vtfplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtkplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/vtkplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/vtkplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/webpdbplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/webpdbplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/webpdbplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xbgfplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xbgfplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/xbgfplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xsfplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xsfplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/xsfplugin.so
> Warning) Unable to open dynamic library 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xyzplugin.so'.
> Warning) vmddlopen failed: GetLastError returned 1114
> Warning) Unable to dlopen 'C:/Program
> Files/VMD/plugins/WIN64/molfile/xyzplugin.so':
> Unable to dlopen plugin file C:/Program
> Files/VMD/plugins/WIN64/molfile/xyzplugin.so
> Info) Dynamically loaded 57 plugins in directory:
> Info) C:/Program Files/VMD/plugins/WIN64/molfile
> The irspecgui package could not be loaded:
>
> The multiseq package could not be loaded:
>
> The networkview package could not be loaded:
>
> The pmepot_gui package could not be loaded:
>
> The autoionizegui package could not be loaded:
>
> The solvate package could not be loaded:
>
> The autopsf package could not be loaded:
>
> The cggui package could not be loaded:
>
> The dowser_gui package could not be loaded:
>
> The chirality_gui package could not be loaded:
>
> The cispeptide_gui package could not be loaded:
>
> The forcefieldtoolkit package could not be loaded:
>
> The mdff_gui package could not be loaded:
>
> The membrane package could not be loaded:
>
> The membranemixer package could not be loaded:
>
> The mergestructs package could not be loaded:
>
> The molefacture package could not be loaded:
>
> The mutator package could not be loaded:
>
> The alascan package could not be loaded:
>
> The autoimd package could not be loaded:
>
> The qwikmd package could not be loaded:
>