From: Kapil Amarnath (kapilamar85_at_gmail.com)
Date: Sun Aug 14 2011 - 13:30:09 CDT

Thanks Balazs. That was helpful.

On Fri, Aug 12, 2011 at 4:57 PM, Balazs Jojart <jojartb_at_gmail.com> wrote:

> Hi Kapil,
> Check this page:
> http://opm.phar.umich.edu/
> HTH,
> Balazs
>
>
> On 08/12/2011 06:19 PM, Kapil Amarnath wrote:
>
>> Hi all,
>>
>> I am working with a membrane protein that is asymmetric and arbitrarily
>> located and rotated in space. I would like to orient the protein "flat" onto
>> the x-y plane of the coordinate system used in the pdb file, with the center
>> of the protein at (0,0,0), and I would to obtain the coordinates of the
>> protein in its new location/orientation. Is there any way to use VMD to
>> obtain the necessary translation vector and rotation matrices for doing so?
>> Is this information even contained in the pdb file?
>>
>> Thanks,
>> Kapil
>>
>>
>
> --
> Balazs Jojart, Ph.D.
>
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