VMD-L Mailing List

From: bo baker (bo.bybaker_at_gmail.com)
Date: Sat Feb 28 2009 - 23:06:17 CST

Thanks, Bin:

Further to my question. Instead of trajotory, I would like delete
certain residues from a set of structures. The structures are obtained
from protein docking and have same resid. I wonder if there is a
script to allow one delete the residues from all these structures?

Thank you

Bo

On 3/1/09, BIN ZHANG <zhngbn_at_gmail.com> wrote:
> This can be done using "catdcd" with option [- i].
> Check here (
> http://www.ks.uiuc.edu/Research/vmd/plugins/catdcd/ )
>
> Bin
>
>
>
> On Feb 28, 2009, at 1:46 AM, bo baker wrote:
>
>
> > Dear VMD:
> >
> > I would like to delete the ligands from the trajectories. Is there a
> > way to do so?
> >
> > I know that one can delete residues from one protein structure, such as:
> >
> > set sel [atomselect top "not (resname FAD FMN NAP)"]
> > $sel writepdb test1.pdb
> >
> > Just wonder how it works with a set of structures, such as trajectory
> > once they are all
> >
> > loaded?
> >
> > Thank you for your advice
> >
> > Bo
> >
>
>