VMD-L Mailing List

From: Ioana Cozmuta (ioana_at_nas.nasa.gov)
Date: Mon Apr 21 2003 - 13:38:49 CDT

Hi,

I am having troubles showing a periodic representation of a water box. I
load the structure generated in amber (pdb file made with ambpdb from
prmcrd and prmtop files). Then I set the values for a, b, c, and the UC
angles corresponding to the values in the prmcrd file.
When I want to show the +X or -X image, between the self representation
and the images there is a gap.
Also when I load a .dcd file I have to reset the UC parameters for every
frame, it seems that vmd does not now how to store them. Is there a simple
way around this?

Would it be possible to add in the Representation menu some boxes for the
UC parameters?

Thanks,
Ioana