VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Feb 04 2003 - 15:00:55 CST

Dear Yongmei,
  When you load your Parm file, can you double-check that its loading
using the type "parm7" in the file type listing in the molecule file
browser form? If this is the case, I'll need to see the file you're
loading in order to determine what problem you might be running into.
If you encounter any error like that with the parm file, then the
trajectory file will fail to load as well (best case).

Let me know about the file type. If you are in fact loading with
the filetype as "parm7" then I'll need a copy of the parm file that
causes the problem.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Feb 04, 2003 at 03:57:18PM -0500, Yongmei Wang wrote:
>
> Hi, I am new on this email listing.
>
> I am using VMD 1.8 on SGI/IRIX6.5 and amber7.0. Somehow I can not load parm
> and coordinate files created using leap under amber7.0.
> it complains " unexpected EOF file in the parm file". The parm file is fine,
> I used it to run the sander. What's the problem?
>
> THen I tried to load the parm file and the trajectory file mdcrd created by
> sander, this time it complains "memory allocation error", not enough swap
> space.
>
> Anyone has any idea what's the problem?
>
> Thanks
> Yongmei
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078