VMD-L Mailing List

From: Jakob Petersen (petersen.jakob_at_gmail.com)
Date: Sun Jul 01 2007 - 13:56:58 CDT

Dear all,
I would like to visualize simulations (done with own hand-written
simulation code) with VMD. I have made a XYZ file, but it seems like,
that bonds can't be visualized. Now I try making a VTF file, but
something goes wrong. I'm using the winvmd186 version and the
following message appears, when I try to load the VTF file: "winvmd
has encountered a problem and needs to close".
The VTF file looks like this:

atom 0:2 radius 2.0
bond 1:0
bond 2:1

timestep ordered
1.0 0.0 0.0
2.0 0.0 0.0
3.0 0.0 0.0

timestep ordered
1.0 1.0 0.0
2.0 2.0 0.0
3.0 3.0 0.0

What should I do?
Thanks a lot,
Jakob