VMD-L Mailing List

From: GAGANJYOT KAUR BAKSHI (gaganjyot.bakshi_at_s.amity.edu)
Date: Wed Jun 14 2023 - 14:40:04 CDT

But how to load .dtr file in maestro?

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________________________________
From: Diego Gomes <diego.enry_at_gmail.com>
Sent: Thursday, June 15, 2023 1:03:50 AM
To: GAGANJYOT KAUR BAKSHI <gaganjyot.bakshi_at_s.amity.edu>
Cc: vmd-l_at_ks.uiuc.edu <vmd-l_at_ks.uiuc.edu>
Subject: Re: vmd-l: Converting namd trajectory to desmond trajectory

That was answered 15 day ago, make sure to search the list in the future.

https://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/34257.html 

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Since VMD 1.8.7 the Desmond and Maestro plugins are included.
A. You may load the .psf (or pdb) and .dcd trajectory
B. Save as .dtr (Desmond Trajectory)
Done!
Made you a short how-to video
https://urldefense.com/v3/__https://youtu.be/5iZG7PZ76VY__;!!DZ3fjg!5HyBEKmcSIDalPmkAoW1n8huaNiCtWGmwHEMBcYzcq_OCrWyUHXsGnADS3qrjSTj1PrHZH1yhosjtRl42xGaBzRd5l8ODL__$ 
Make sure to go through the NAMD/VMD tutorials.
https://www.ks.uiuc.edu/Training/Tutorials/
On Tue, Jun 13, 2023 at 3:28 PM GAGANJYOT KAUR BAKSHI <gaganjyot.bakshi_at_s.amity.edu<mailto:gaganjyot.bakshi_at_s.amity.edu>> wrote:
Hello guys,
I want to analyse my NAMD trajectories in maestro. How can i convert it in desmond or maestro format?
Please let me know
Thanks
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--
Diego Enry B. Gomes, PhD
Department of Physics
Leach Science Center
Auburn University
dgomes_at_auburn.edu<mailto:dgomes_at_auburn.edu>
+1 (334) 559-4016