VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Sat Oct 13 2007 - 17:25:13 CDT

You can also try the vmd molefacture plugin, which is designed for this
purpose.
Peter

L. Michel Espinoza-Fonseca wrote:
> Hi Amit,
>
> You can try out VEGA:
>
> http://users.unimi.it/~ddl/vega/index2.htm
>
> Cheers,
> Michel
>
> 2007/10/12, Amit <amit1b_at_hotmail.com>:
>
>> Hi,
>> I'm looking for a way to work with small non-protein molecules like the
>> hormone epinephrine or the drug acetaminophen, on VMD. I have a chemistry
>> software that allows me to build such molecules from scratch and save them,
>> but the format of the saved file is mopac (.mop), which VMD doesn't seem to
>> recognize. Is there a free tool I can use to convert these files to
>> something VMD can work with? Alternatively, is there a way of generating
>> such small molecules with VMD?
>> Cheers,
>> Amit.
>>
>>
>>
>>
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