VMD-L Mailing List

From: daniel aguayo (bioquimico_at_gmail.com)
Date: Tue Aug 11 2009 - 13:16:04 CDT

Tks a lot John
:P

My bests

Daniel

On Thu, Aug 6, 2009 at 3:48 PM, John Stone<johns_at_ks.uiuc.edu> wrote:
>
> Hi,
>  I've posted a MacOS X binary of cionize for you here:
> http://www.ks.uiuc.edu/Research/vmd/alpha/cionize/
>
> To run it, gunzip it, then see the README file that I put
> in that directory as well.  Let me know if you need help
> using it or if you run into any problems.
>
> I should mention that VMD is beginning to incorporate the
> computation routines used by cionize, and we'll probably completely
> replace cionize with VMD scripts in the next 6 months or so.
> All that remains is to write new VMD routines to do the electrostatic
> map "update" steps that cionize does after placing each ion.  Once
> that's in place, you'll be able to write a short VMD script that does
> everything that cionize does.
>
> Cheers,
>  John Stone
>  vmd_at_ks.uiuc.edu
>
> On Wed, Aug 05, 2009 at 09:46:10PM -0400, daniel aguayo wrote:
>> Tks John, I'll be waiting for it.
>> Cheers
>> DAV
>>
>> On Wed, Aug 5, 2009 at 9:43 PM, John Stone<johns_at_ks.uiuc.edu> wrote:
>> >
>> > Hi,
>> >  I will be compiling updated versions of catdcd and cionize based
>> > on the latest VMD plugins.  I should be able to provide CUDA-enabled
>> > Mac builds of cionize shortly.
>> >
>> > Cheers,
>> >  John Stone
>> >  vmd_at_ks.uiuc.edu
>> >
>> > On Wed, Aug 05, 2009 at 09:29:07PM -0400, daniel aguayo wrote:
>> >> I want to use de cionize plugin on vmd 1.8.7, but I can't find de
>> >> cionize executable?
>> >> I tried to compile it from the source version on my mac leopard, but I can't.
>> >> Anyone can help me.
>> >>
>> >> Tks a lot
>> >>
>> >> Daniel Aguayo V.
>> >> Centro de Bionformatica y Simulacion Molecular
>> >> Universidad de Talca
>> >> Chile
>> >>
>> >> --
>> >> saludos desde el fin del mundo
>> >
>> > --
>> > NIH Resource for Macromolecular Modeling and Bioinformatics
>> > Beckman Institute for Advanced Science and Technology
>> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>> > Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
>> >  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078
>> >
>>
>>
>>
>> --
>> saludos desde el fin del mundo
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
>  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078
> 

-- 
saludos desde el fin del mundo