From: Taeho Kim (taehok_at_gurum.inje.ac.kr)
Date: Mon Apr 03 2006 - 03:16:01 CDT

Dear, all.


When I made a segment to make a .psf file, I met a error like below.

================================
vmd > segment NE {
? first NONE
? last NONE
? pdb neurospora1.pdb
? }
building segment NE
setting patch for first residue to NONE
setting patch for last residue to NONE
reading residues from pdb file neurospora1.pdb
extracted 283 residues from pdb file
Info: generating structure...
Info: skipping improper N-C-CA-HN at beginning of segment.
Info: skipping conformation C-N-CA-C at beginning of segment.
Info: skipping conformation C-CA-N-HN at beginning of segment.
Info: skipping bond C-N at end of segment.
Info: skipping improper C-CA-N-O at end of segment.
Info: skipping conformation CA-C-N-CA at end of segment.
Info: skipping conformation N-CA-C-O at end of segment.
Info: skipping conformation N-CA-C-N at end of segment.
Info: segment complete.
=================================

Please let me know the reason or solvation.

Thank you very much in advance.

=====
Taeho Kim(ȣ)