From: Alejandro Ortega (
Date: Fri Apr 04 2008 - 11:24:14 CDT


I am new at VMD and NAMD. I know that to make a movie, I need to run with
namd the config file, which is going to call the PDB, PSF and my INP or
PARAMS files.

But my question is, how do I get the topology file from my protein? I have
tried with paratool but it is not working. How can I build it starting from
my PDB file?

Alejandro Ortega
University of Texas at El Paso