VMD-L Mailing List

From: mohammad agha (mra_bu_at_yahoo.com)
Date: Sat May 19 2012 - 15:56:00 CDT

Dear Ajasja, OK. Thank you very much from your help. Best Regards Sara ________________________________ From: Ajasja Ljubetič <ajasja.ljubetic_at_gmail.com> To: mohammad agha <mra_bu_at_yahoo.com> Cc: "vmd-l_at_ks.uiuc.edu" <vmd-l_at_ks.uiuc.edu> Sent: Sunday, May 20, 2012 12:37 AM Subject: Re: vmd-l: cg_bonds.tcl Do you have any particular reason for using such an old VMD version? I recommend to first Install 1.9.1 an then try again. Regards, Ajasja On 19 May 2012 07:32, mohammad agha <mra_bu_at_yahoo.com> wrote: Dear VMD Specialists, > > >I installed vmd 1.8.6 in my laptop. I want to see my system that is in MARTINI CG force field by this tool. I am using the cg_bonds.tcl, when I write "cg_bonds -gmx /usr/local/bin/gmxdump -tpr md.tpr" , vmd answer me: invalid command name "dict" >Before, I worked by this and didn't have problem, but I don't know where is my mistake?! > >Please help me. >Best Regards >Sara >