From: mohammad agha (
Date: Sat May 19 2012 - 15:56:00 CDT

Dear Ajasja, OK. Thank you very much from your help. Best Regards Sara ________________________________ From: Ajasja Ljubetič <> To: mohammad agha <> Cc: "" <> Sent: Sunday, May 20, 2012 12:37 AM Subject: Re: vmd-l: cg_bonds.tcl Do you have any particular reason for using such an old VMD version? I recommend to first Install 1.9.1 an then try again. Regards, Ajasja On 19 May 2012 07:32, mohammad agha <> wrote: Dear VMD Specialists, > > >I installed vmd 1.8.6 in my laptop. I want to see my system that is in MARTINI CG force field by this tool. I am using the cg_bonds.tcl, when I write "cg_bonds -gmx /usr/local/bin/gmxdump -tpr md.tpr" , vmd answer me: invalid command name "dict" >Before, I worked by this and didn't have problem, but I don't know where is my mistake?! > >Please help me. >Best Regards >Sara >