From: Sun Yicheng (sunyicheng001_at_hotmail.com)
Date: Mon Sep 28 2009 - 08:36:34 CDT

Dear VMD users,

         I need to visualize energy of each atom in each time-step of my simulation.
I have writen a regular PDB file and the numerical values for energy were stored in "beta" field,
then ,

set sel [atomselect top all]
$sel set user [$sel get beta]

does that means all of the value for energy were stored in "user" field?
i choose the "user" coloring method in Graphical Representations and "update color every frame" in Trajectory,but the color is not changed at each frame. I was puzzled by this problem for days,
any suggestion will be appreciated.
Thank you very much.

2009-09-28

Sun Yicheng
NanJing University