From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Sun May 29 2011 - 10:17:22 CDT

2011/5/29 Ömer AN <bounlu_at_gmail.com>:
> Hi,
>
> Is there any option to "Save Coordinates" of all loaded molecules at once,
> preferably merged in a single pdb file if possible?

no.

but the topotools plugin has a "mergemols" procedure, that can
combine multiple molecules into one. which you can then save
as usual.

http://sites.google.com/site/akohlmey/software/topotools/topotools---documentation#TOC-mergemols-list-of-molecule-ids-

axel.

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.