VMD-L Mailing List

From: Tyler Luchko (tluchko_at_gpu.srv.ualberta.ca)
Date: Mon Dec 08 2003 - 12:36:03 CST

Hello,

I've recently run into a problem using stride via the cartoon
representation where I get the error:

File /usr/tmp/filen0BRs1 has no coordinates
Error reading PDB file /usr/tmp/filen0BRs1

I tracked down the temp file to look at it and all the coordinates were
there. However, I noticed a slight formatting problem in an extra space
after the residue name. I changed this with sed from

ATOM 69526 N MET 23175 36.212 6.640 12.342

to

ATOM 69526 N MET 23175 36.212 6.640 12.342

and stride worked fine from the command line. I believe this would
correspond to changing line 49 of Stride.C from

       "ATOM %5d %4s %-4s %4d %8.3f%8.3f%8.3f\n",

to

       "ATOM %5d %4s %-4s%4d %8.3f%8.3f%8.3f\n",

I haven't compiled this to test it but I think this should work.

Thanks,

Tyler