VMD-L Mailing List
From: Denish Poudyal (qrystal45_at_gmail.com)
Date: Sun Mar 25 2018 - 20:22:34 CDT
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- Next in thread: Ashar Malik: "Re: i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster???"
- Reply: Ashar Malik: "Re: i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster???"
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*Denish PoudyalCDPTU, Nepal*
- Next message: The Cromicus Productions: "Re: [VMD-NAMD] Question about Dipole of DNA / Dipole Moment Watcher Plugin"
- Previous message: John Stone: "Re: Regarding Installation of DruGui"
- Next in thread: Ashar Malik: "Re: i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster???"
- Reply: Ashar Malik: "Re: i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster???"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
