From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Wed Oct 12 2011 - 16:46:59 CDT

On Wed, Oct 12, 2011 at 4:45 PM, kirtana S <skirtana4_at_gmail.com> wrote:
> I am trying to build a lammps input file using the topotools tutorials . In
> tutorial part 2 , how should I modify the .tcl
> script to construct a chain instead of monomers.

part 1 gives you an example for how to construct a bond list.
http://sites.google.com/site/akohlmey/software/topotools/topotools-tutorial---part-1#TOC-Step-1d:-Automatic-bond-detection-d
if your chain is more complicated, you have to write additional Tcl code.
the tutorial is by definition only showing you the principles;
how you apply it to a real world case, is your job.

cheers,
     axel.

>
> Thanks
> kirtana

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.