VMD-L Mailing List

From: Kalavera_at_gmx.net
Date: Thu Apr 02 2009 - 08:50:49 CDT

hello everybody,
after using the autoionize script from Ilya Balabin and Marcos Sotomayor
(http://www.ks.uiuc.edu/Research/vmd/plugins/autoionize/)and exchanging the sodium with potassium I got confused by the visual results in VMD, because of different radii for potassium and chloride ions.
In my case the chloride ion is displayed nearly two times smaller than the potassium if VDW is used as the drawing method. I need to know if this is the normal case and whether my system is setup properly.

Thx for your replies,
M.Kalavera 

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