From: Peter Freddolino (
Date: Sat Nov 24 2007 - 08:36:20 CST

Hi Aneesh,
if you could be more specific about what you mean by "a hydrophobicity
plot" we may be able to help; there are multiple definitions I can think
of for what you may be looking for.

aneesh cna wrote:
> hello vmd users,
> I would like to know whether there is any way to get a
> hydrophobicity plot for a protein (with more than 200) residues using
> VMD.
> with regards
> Aneesh