VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Wed Mar 28 2007 - 10:04:03 CDT

(erm, sorry, that should be animate write dcd myfile.dcd sel $sel)

Peter Freddolino wrote:
> animate write dcd sel $sel will work; please see the docs for the
> animate command at
> http://www.ks.uiuc.edu/Research/vmd/current/ug/node108.html for other
> arguments you can tack on to that.
>
> Peter
>
> namd vmd wrote:
>
>> Hallo,
>>
>> It must be possible to use the animate command to be able to write the
>> trajectory for only the protein from the entire protein-water
>> trajectory ? Catdcd can be used to do it, but that needs indices for
>> each atom, which is not very convenient. Can anyone please share a
>> script where animate is used to read a frame, select certain residues,
>> and append the frame to the new trajectory ?
>>
>> thank you very much,
>>
>> rose
>>
>
>