VMD-L Mailing List

From: Satyavani Vemparala (vani_at_VITAE.CMM.UPENN.EDU)
Date: Sun Feb 29 2004 - 10:45:49 CST

Hello

Is there a command in VMD to see waters 'inside' a protein? i.e., if there
is a hydrophobic cavity in a pore, and i want to see the number of waters
within this cavity, is there a command/script ?

i feel 'within' is too generic.

Thanks
Vani