VMD-L Mailing List
From: ragesh c (crnambiar86_at_yahoo.co.in)
Date: Wed Sep 19 2012 - 04:22:41 CDT
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from
Ragesh c
National institute of technology,calicut
India
sir,
i have connected two graphene sheet using Add bond tool of VMD. After running in Lammps i checked dump file in VMD and saw that , in the connected area(Add bond) the c-c bond looks so flexible and deform compare to c-c bonds in original graphene.
one more thing ..After merging .pdb and .psf file of two graphene sheet i just added bond. and created new .pdb and .psf file of final structure . then i again loaded .pdb and .psf file of final structure , i expected final structure will be single unit. but when i used move fragment tool to move final structure , each graphene
sheet acted as seperate fragment and bond between them(which i added using Add bond tool) got elongated....i jus wonder , there is some way to creat solid bond between two structures
regards
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