VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Feb 05 2003 - 09:33:25 CST

Dear Lubos,
  VMD 1.8 includes an Amber7 parm reader which works for all of the
input files I've seen so far. I believe that Yongmei's problem is
related to using the alpha version from last summer, which did not
have the final Amber7 reader.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Feb 05, 2003 at 09:21:25AM +0100, Lubos Vrbka wrote:
> hi,
>
> just one remark... it seems to me that this is the problem with the
> changed format of the amber 7.0 parameter/topology file. you could also
> use the "new2oldparm" from the amber-7.0 software package to get the old
> version (i.e. amber-6.0) of parm/top (suggestion taken from the amber
> tutorial on their webpage, i did not try myself)
>
> regards,
> lubos
>
> --
> -
> #################################################
> Lubos Vrbka
> National Centre for Biomolecular Research
> Masaryk university, Brno, Czech Republic
>
> shnek_at_chemi.muni.cz
> http://www.chemi.muni.cz/~shnek
> tel. +420 541 129 508
> #################################################
> 

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