VMD-L Mailing List

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Wed Feb 05 2003 - 04:32:32 CST

if you load the traj using parm7 type everything should work fine. I am
using VMD to display amber traj and with the new top. file type from
AMBER you should choose parm7. It works ok for me.
Best,
vlad

Lubos Vrbka wrote:

> hi,
>
> just one remark... it seems to me that this is the problem with the
> changed format of the amber 7.0 parameter/topology file. you could
> also use the "new2oldparm" from the amber-7.0 software package to get
> the old version (i.e. amber-6.0) of parm/top (suggestion taken from
> the amber tutorial on their webpage, i did not try myself)
>
> regards,
> lubos
> 

-- 
Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204