VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jan 07 2008 - 01:59:40 CST

Hi,
  If you have the other required packages installed, you might try
out the "Cluster" VMD plugin by Luis Gracia at Cornell:
  http://physiology.med.cornell.edu/faculty/hweinstein/vmdplugins/cluster/

So far as I'm aware, his plugin doesn't care what file format the trajectory
came from.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Sun, Jan 06, 2008 at 02:27:19AM -0800, Francesco Pietra wrote:
> Is it possible to carry out a cluster analysis with VMD from Amber mdcrd/prmtop
> files? I have combined the various trajectories into a single mdcrd of ca 90
> MB.
>
> Thanks
> francesco pietra
>
>
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-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
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