VMD-L Mailing List

From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Mon Oct 06 2014 - 05:25:26 CDT

Please notice that the user field is frame dependent. So if there are
multiple frames one would need to set it for all the frames desired. It
might be better to either overwrite the beta values with the log, or save
them to the occupancy field.

Norman Geist.

> -----Ursprüngliche Nachricht-----
> Von: owner-vmd-l_at_ks.uiuc.edu [mailto:owner-vmd-l_at_ks.uiuc.edu] Im
> Auftrag von Tristan Croll
> Gesendet: Montag, 6. Oktober 2014 10:13
> An: Eric Smoll
> Cc: vmd-l_at_ks.uiuc.edu
> Betreff: Re: vmd-l: log colorscale
>
> Why not just put the log of the beta values into the user field and
> colour by that?
>
> set sel [atomselect top all]
> foreach i [$sel get index] {
> set thissel [atomselect top "index $i"]
> set thisbeta [$thissel get beta]
> $thissel set user [ expr log10 ( $thisbeta ) ]
> $thissel delete
> }
> $all delete
>
>
>
> Tristan Croll
> Lecturer
> Faculty of Health
> School of Biomedical Sciences
> Institute of Health and Biomedical Engineering
> Queensland University of Technology
> 60 Musk Ave
> Kelvin Grove QLD 4059 Australia
> +61 7 3138 6443
>
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>
>
> > On 6 Oct 2014, at 7:26 am, "Eric Smoll" <ericsmoll_at_gmail.com> wrote:
> >
> > Hello VMD users,
> >
> > Is there a simple way to apply a logarithmic color scale based on the
> beta parameter values in VMD?
> >
> > Best,
> > Eric 

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