VMD-L Mailing List

From: Shangmin Xiong (sxiong0108_at_gmail.com)
Date: Sun Apr 24 2016 - 22:46:44 CDT

Dear All,

I am trying to plot dynamic bonds for atoms that are 3.7 to 4.3 Angstroms
apart. So I'd like to avoid any bond shorter than 3.7 A. However, dynamic
bond settings connect any atoms that are within the defined cutoff by
default. I tried to make the unwanted bonds black or transparent, but they
wouldn't vanish. Is possible to define a minimum distance cutoff please?
Are there other ways to plot the bonds please?

Thanks,
Shangmin