VMD-L Mailing List

From: Leonardo Trabuco (ltrabuco_at_ks.uiuc.edu)
Date: Sat Sep 04 2010 - 04:36:45 CDT

Did you try using the Dowser plugin in VMD?
http://www.ks.uiuc.edu/Research/vmd/plugins/dowser/

Leo

On Fri, Sep 3, 2010 at 11:38 PM, Chen, Zhihong (chenz2)
<chenz2_at_mail.uc.edu> wrote:
> Hi,
>  I followed command
> # exec csh
> # source dowserinit
> # dowser
> to install my dowser. But when i wrote "dowser prot.pdb -probe 0.2 -separation 1.0" to the shell, i got * REFORMAT THE INPUT PDB FILE and EXTEND WITH POLAR HYDROGEN ATOMS
> * execute: reformatPDB -pdbin processed-for-dowser.pdb  -pdbout reform.pdb
> *
> ~/reformatPDB: Command not found.
> Could someone help me with that! thanks
> cheers
>
> Jackie Chen
>
>
> 

--
Leonardo Trabuco, Ph.D.
CellNetworks, BioQuant
University of Heidelberg, Germany