VMD-L Mailing List

From: Dolan, Michael (NIH/NIAID) [C] (dolanmi_at_niaid.nih.gov)
Date: Wed Dec 24 2008 - 11:59:25 CST

Hello,

Is there an automated way to turn an all-atom representation of a DOPC bilayer into a SBCG model?

I would like to simulate a DOPC bilayer with embedded protein using SBCG, but cannot find a straightforward method to do this. The idea is to perfrom a similar experiment to that doen in Anton's wonderful paper involving BAR domains (Biophys J (2008) 95(6):2806-21.) I can probably write a few scripts to do this more manually, but wanted to check here first.

Any help is most appreciated,

Mike Dolan
NIH