VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Sat May 22 2004 - 00:25:19 CDT
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- In reply to: Hua Wong: "Help about Contact Map plugin"
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Hi,
If you're familiar with the atom selection methods in VMD, the
atom selection text boxes in the contact map plugin work exactly
the same way. If you know which residues are hydro[phob/phil]ic you can
select them in the text boxes via resname/resid selections, or whatever
method will get you the right residues with the least typing :)
There are numerous atom selection examples in the VMD user's guide,
as well as the tutorials on that page:
http://www.ks.uiuc.edu/Research/vmd/current/docs.html
John Stone
vmd_at_ks.uiuc.edu
On Tue, May 18, 2004 at 02:23:24PM +0200, Hua Wong wrote:
> I would like to know how to use the VMD plugin Contact Map. What I want is to view contact involving only hydrophobic or hydrophilic residues in a molecule.
>
> Can someone help me on how to use the selection features in "contact map" ?
>
> Thanks
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: ILJA Khavrutskii: "How to read i8(64 bit) .crd file with 32 bit VMD"
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- In reply to: Hua Wong: "Help about Contact Map plugin"
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