VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Oct 30 2014 - 08:41:05 CDT

You can probably still used IED, but IED is written in an older
version of Python, so you'd just have to compile IED against a
(compatible) older Python. I believe that Jerome Henin had patched
IED at one point and gotten it (largely?) working with current
versions of Python, but I don't know where that work left off.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Oct 30, 2014 at 10:38:51AM +0100, Vlad Cojocaru wrote:
> Dear all,
>
> I have been using in the past the IED plugin to visualize essential
> dynamics in VMD. However, this only works with older versions of VMD. Is
> there any alternative in VMD to visualize modes created using the
> CPPTRAJ program of Amber ?
>
> Thanks
> Vlad
>
> --
> Dr. Vlad Cojocaru
> Computational Structural Biology Laboratory
> Department of Cell and Developmental Biology
> Max Planck Institute for Molecular Biomedicine
> Röntgenstrasse 20, 48149 Münster, Germany
> Tel: +49-251-70365-324; Fax: +49-251-70365-399
> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> http://www.mpi-muenster.mpg.de/research/teams/groups/rgcojocaru 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/