From: Andres Morales N (
Date: Mon Jan 26 2009 - 14:37:40 CST

I have a problem, I am studing protein folding, so I have to study dcd trayectors gotten at 1000K.
Then I have to apply to cool each of the high temperature conformations down to 300 K. After that I have to minimize each one. The problem is that I have 10000 conformation (I got one each ps during 10 ns).
Do I have to get the pdb of each frame and then quench and minimize them, or are there any procedure to improve it.
Please if someone has an idea , help me.
Thanks a lot.
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