VMD-L Mailing List

From: leila karami (karami.leila1_at_gmail.com)
Date: Sun Dec 26 2010 - 08:11:34 CST

Dear VMD users

I have a initial pdb file containing protein, dna and water molecules.
I need to psf file. I want to use amber03 force field to obtain psf file.

is it possible?

which of autopsf and psfgen is more suitable for creating of psf file?

any help will highly appreciated. 

-- 
Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group