VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jul 15 2003 - 09:48:44 CDT

Luca,
  Perhaps you've run into a bug in the older version of our Gromacs
plugin? You didn't mention which version of VMD you're using, nor what
computer platform, all of these bits of information would be very helpful
to us. Do you have a relatively small double-precision .trr trajectory
that fails that you could send us for testing?

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Jul 15, 2003 at 02:30:44PM +0200, Luca Mollica wrote:
> Dear all users,
>
> I'm using VMD in order to visualize both protein structures and
> trajectories from Molecular Dynamics simulations(performed using GROMACS
> 3.1.4, .trr format).
> But I have a problem: I am able only to visualize trajectories
> calculated in single precision, but I hadn't find yet a way to visualize
> double precision trajectories. To do so, I have only to use the internal
> GROMACS not OpenGL based display.
> Is this a VMD problem itself or was there a trouble in my installation
> routine?
>
> Thank you in advance
>
> LM
>
>
>
>
> *******************************************************************************************************
>
> Luca Mollica
> Dulbecco Telethon Institute (Protein Structure Laboratory)
> c/o Cellular and Molecular Neurobiology
> DIBIT-HSR,Via Olgettina 58
> 20132 Milano (Italy)
>
> Tel: 0039-02-26434824
> Fax: 0039-02-26434813
> E-mail: mollica.luca_at_hsr.it
>
> DTI website: http://www.telethon.it/dti/ 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078