VMD-L Mailing List

From: Abolfazl Musavi (ab.musavi1990_at_gmail.com)
Date: Sun Jun 02 2019 - 18:47:26 CDT

Thank you for the response.

On Mon, 3 Jun 2019 at 03:27, Dallas Warren <dallas.warren_at_monash.edu> wrote:

> How about making a 3d probability surface, in say Gaussian Cube or
> gOpenmol plt format, of the correct size, then translate around until
> in the correct position?
>
> Some other suggestions -
> https://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/8556.html
>
> Catch ya,
>
> Dr. Dallas Warren
> Drug Delivery, Disposition and Dynamics
> Monash Institute of Pharmaceutical Sciences, Monash University
> 381 Royal Parade, Parkville VIC 3052
> dallas.warren_at_monash.edu
> ---------------------------------
> When the only tool you own is a hammer, every problem begins to resemble a
> nail.
>
> On Sun, 2 Jun 2019 at 13:58, Abolfazl Musavi <ab.musavi1990_at_gmail.com>
> wrote:
> >
> > Dear all,
> >
> >
> >
> > I want to draw several cubic boxes to separate different regions in the
> simulation box. I want their sides to be semi-transparent and with
> different colors. I do not want to draw a cube by lines because then there
> will not be any side surfaces.
> >
> >
> >
> > I would be appreciated if anyone could tell how to do that in VMD.
> >
> >
> >
> > Regards
> >
> > Abolfazl
>