From: Axel Kohlmeyer (
Date: Mon Jul 05 2010 - 11:47:31 CDT

On Mon, 2010-07-05 at 17:42 +0330, leila karami wrote:
> Hi
> my previous mail to VMD was
> [Hi VMD users
> I have a pdb file containing 2 chains,A : protein and B: DNA. I did
> simulation of interaction of pr-dna interaction.
> Can I obtain Contact map plot of protein–DNA interactions using VMD ?
> how?
> any help will highly appreciated.]
> same email was sent to me without any answer.

if you are subscribed to a mailing list, they you
should also receive your own mails to this list.
> please guide me about my qestion (contact map by detail)

have you checked out this plugin?


> thanks in advance.

Dr. Axel Kohlmeyer
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.