VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Mon Jul 05 2010 - 11:47:31 CDT

On Mon, 2010-07-05 at 17:42 +0330, leila karami wrote:
> Hi
>
> my previous mail to VMD was
>
> [Hi VMD users
>
> I have a pdb file containing 2 chains,A : protein and B: DNA. I did
> simulation of interaction of pr-dna interaction.
> Can I obtain Contact map plot of protein–DNA interactions using VMD ?
>
> how?
>
> any help will highly appreciated.]
>
> same email was sent to me without any answer.

if you are subscribed to a mailing list, they you
should also receive your own mails to this list.
  
> please guide me about my qestion (contact map by detail)

have you checked out this plugin?

http://www.ks.uiuc.edu/Research/vmd/plugins/contactmap/

cheers,
   axel.

> thanks in advance. 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com
http://sites.google.com/site/akohlmey/
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.