VMD-L Mailing List

From: Gustavo Seabra (gustavo.seabra_at_gmail.com)
Date: Fri Sep 22 2006 - 13:37:34 CDT

Hi,

I have a large system, and I have charge data for just part of it
(it's a QM/MM simulation). How can I use VMD to visualize the charges
only in this part, or even better, only in specific atoms? (It could
be with a change in color, or whatever other means people use for
that.)

(I saw the demo in Axel Kohlmeyer web page, but there he used a system
of only 3 atoms. What I have are Amber files using ~5000 atoms, for
which I have charges for only 140.)

Thanks,

Gustavo.