From: Parisa Akhski (
Date: Tue Jul 20 2010 - 12:36:32 CDT


Thanks for the information. Would you please let me know where I can find the instructions to use it on the other platforms?


-----Original Message-----
From: John Stone []
Sent: Tue 7/20/2010 10:41 AM
To: Parisa Akhski
Subject: Re: vmd-l: Cannot find "cionize plugin" in VMD

  For the short term, you will need to use the cionize tool
on one of the other platforms, as we don't have a Windows version
compiled at present. Let us know if you need help with this.

Ultimately this functionality will become part of VMD, but if I
end up having the time, I will look into getting a Windows version

  John Stone

On Fri, Jul 16, 2010 at 03:26:59PM -0400, Parisa Akhski wrote:
> Hi everyone,
> Does anyone please know which version of VMD covers "cionize plugin"
> (preferably on windows)? I need to neutralize a DNA molecule and I'am
> really confused in finding it!
> Thanks a lot,
> Parisa

NIH Resource for Macromolecular Modeling and Bioinformatics
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