From: Justin Gullingsrud (jgulling_at_mccammon.ucsd.edu)
Date: Fri Oct 31 2003 - 11:09:39 CST

On Oct 31, 2003, at 8:12 AM, Brian Bennion wrote:

> In the graphical representations box under the trajectory tab, you can
> turn on "update selection every frame" button and that should work.
>

Are you sure this works? If it does it's a bug (or should I say,
unintended feature? ;) Normally the secondary structure stays as it
is, even if you update everything else about the rep, until you call
"mol ssrecalc <molid>" (or the equivalent).

Justin

> Brian
>
> On Fri, 31 Oct 2003, Jérôme Hénin wrote:
>
>> Hi all,
>>
>> How can I tell VMD to recalculate (using STRIDE) the secondary
>> structure of a
>> protein for every frame of a trajectory?
>>
>> Thanks
>>
>
> --
> *****************************************************************
> **Brian Bennion, Ph.D. **
> **Computational and Systems Biology Division **
> **Biology and Biotechnology Research Program **
> **Lawrence Livermore National Laboratory **
> **P.O. Box 808, L-448 bennion1_at_llnl.gov **
> **7000 East Avenue phone: (925) 422-5722 **
> **Livermore, CA 94550 fax: (925) 422-6605 **
> *****************************************************************
>
>

--
It is easier to make a theory of everything, than a theory of 
something. -- Aharon Katchalsky