VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Sun May 27 2007 - 18:09:46 CDT

For complete residues, you should actually use
"same residue as within 5 of protein"

fragment will give a set of connected residues (see
http://www.ks.uiuc.edu/Research/vmd/current/ug/node79.html)

Peter

Cesar Luis Avila wrote:
> "same fragment as within 5 of protein"
>
> naga raju escribió:
>> Dear VMD users,
>> I want to insert protein in a lipid
>> bilayer. I aligned protein and lipid bilayer. I used " within 5 of
>> protein" in graphics representation then it selects atoms within 5 of
>> protein, but i need complete residues.
>> would you tell me how to select lipid
>> residues from protein within perticular distance.
>> Thank you in advance,
>>
>> with regards,
>>
>> nagaraju
>>
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