VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 01 2021 - 00:42:12 CST

Hi,
  I'm guessing that this hang is caused by some bug in the multiseq
plugin related to its use of Tk, but that is only a guess.
Do you see any error messages in the main VMD console associated
with the hanging behavior, or is the hang the only observable behavior?

Best,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Nov 26, 2021 at 11:05:02PM -0500, Phillip Compeau wrote:
> Hi,
>
> I am integrating VMD into a publicly available assignment that I
> provide to my course as well (https://urldefense.com/v3/__https://compeau.cbd.cmu.edu/online-education/sars-cov-2-protein-analysis-assignment/__;!!DZ3fjg!pDclAv9hZA92L09-ahO0FM6uDcyFOGbfeoCQpKkV1Rz8lrsqL5MxWaVg_EjA4Hs4cg$
> ).
>
> As part of this, students are asked to, in the MultiSeq window,
> select Tools -> STAMP alignment options -> ok to perform a STAMP
> alignment with the default settings. However, this freezes for my
> students. At first I thought this was Windows only but it seems to
> affect both Windows and Mac.
>
> Thanks for your help! I'm not sure where else would make sense to
> report this issue.
>
> Regards,
>
> Phillip Compeau 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/