From: bo baker (bo.bybaker_at_gmail.com)
Date: Wed Sep 17 2008 - 05:56:20 CDT

Hello:

Can VMD calculate interface propensity for all the residues in the
protein complex?

I notice that there is a VMD script "metal_environment" — Finds the
propensity of residues near given ion.

If VMD can't do such analysis, could any one recommand me a program
for such anaylysis? Not the commercial softwares.

Thank you for your advice.

Bo