VMD-L Mailing List

From: hirdesh kumar (hirdeshs8_at_gmail.com)
Date: Sat Aug 21 2010 - 06:03:46 CDT

Hi Nicholas,
I have tried to write tcl script for rmsf but I could nt. Can you tell me
any link or any reference from where I can get the same

On Sat, Aug 21, 2010 at 12:00 AM, hirdesh kumar <hirdeshs8_at_gmail.com> wrote:

> Thanks.. The link is really useful.
>
>
> On Fri, Aug 20, 2010 at 11:16 PM, Nicholas Musolino <musolino_at_mit.edu>wrote:
>
>> Hello Hirdesh,
>>
>> Have you seen the VMD tutorial?
>> http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/index.html
>>
>> And in particular the "Data ANnalysis" section?
>> http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/node7.html
>>
>> If you read through the "Example of an analysis script," you should be
>> able to change the relevant part to calculate RMSF.
>>
>> Hope this helps!
>>
>> Nicholas Musolino
>>
>>
>> On Aug 20, 2010, at 12:22 PM, hirdesh kumar wrote:
>>
>> > Hi All,
>> > I have the AMBER files in .crd and .parm7 format and I am looking
>> forward to calculate the rms fluctuation residue wise during the entire
>> run.. Please tell me how can I calculate the rmsf using VMD1.8.7 version.
>> >
>> > Thanks in advance,
>> > Hirdesh
>>
>>
>>
>>
>> ---------------------------------------------------------------------------
>> Nicholas Musolino
>> Ph.D. candidate, Department of Chemical Engineering, MIT
>> musolino_at_mit.edu | 617-253-6675 | Room E19-528
>>
>>
>>